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The widely used COPASI software simulates Gepasi models.
There will be no more releases of Gepasi.
Gepasi 3.30 can run in Linux under the Wine emulator! Download a tarball for this purpose
here
Gepasi 3.30 supports
SBML
level 1. It can import and export SBML files and therefore exchange models with other simulation software.
Version 3.30 released September 4, 2002. (
list of changes
)
Sun Microsystems
names Virginia Bioinformatics Institute a Center of Excellence in Bioinformatics and sponsors the development of COPASI (Gepasi's successor). COPASI will be optimized to run on Sun's HPC architectures.
More here...
Future of Gepasi announced December 2000. COPASI will be a more complete simulator running under several hardware platforms (including Linux and Macintosh). COPASI is being written in collaboration with
Dr. Ursula Kummer's group at EML.
Official Virginia Tech press release here.
New website released in November 2000
MEG
program released July 2000. MEG is a support program for Gepasi that facilitates construction of cell culture models.
Version 3.21 released on 27 February 1999 (
some new features and bug fixes
)
Tutorials for optimization and fitting were added to the web site February 1999
Paper published in the Nov. 1998 issue of
Bioinformatics
describes the fitting and optimization features of Gepasi [
abstract
]
Numerical optimisation and simulation for rational metabolic engineering
, a paper about the applications of optimisation with Gepasi (presented at the
1998 BioThermoKinetics meeting
).
Version 3.20 released on 25 July 1998 (
several new features and bug fixes
).
Tutorial web page
made public in September 1997.
TiBS
article published in the September 1997 issue.
Version 3.10 released on 29 August 1997 (
several bug fixes and new features
).
Version 3.03 for Intel released on 25 April 1997 (
3 bug fixes and one new feature
). Alpha binaries released 28 April 1997.
Version 3.02 released on 12 March 1997 (
some bug fixes and new features
)
Version 3.01 for DEC Alpha NT released on 17 January 1997
Version 3.01 released on 17 December 1996 (fixes one bug with user-defined kinetic types and data file name collisions)
Version 3.00 available on SimtelNet and its mirrors on 12 December 1996
Version 3.00 released on 1 December 1996
Last modified:
September 21, 2003
Copyright © 1996-2003
Pedro Mendes
