Help file now includes a section on building multi-compartment models.
The equations for the predefined kinetic types have been extended to include explicitly the volumes of the compartments involved. As a result, when one scans a compartment volume there is no longer any need to link the kinetic constants to this volume (i.e. kinetic constants are now expressed in concentration units rather than amount).
Gepasi 3.1 is now prepared to receive dynamic-link libraries for variable optimisation and parameter fitting (these will be released in a later date).
BUGS FIXED
When models included compartments with volumes other than unity,
Gepasi was failing to correctly build the differential equations
which resulted in incorrect values for the concentrations (and
therefore everything else). This has now been corrected.
Some controls in the Scan page were not disabled during simulation
runs; this if used, these could result in a program crash.
When members of a conservation relation were perturbed while a
time course was paused, the total mass of the moiety was not
updated and this resulted in incorrect values for the members of
that conservation relation. This is now fixed.
An error in the file saving routine caused loss of precision on
numbers smaller than 1e-16.
Minor user-interface faults in the "reactions" and "compartments"
dialog boxes were fixed.